Webexamples in this figure are bootstrap analyses of a hypothetical dataset with 5 genes (1–5) and 100 pseudoreplicates. Yellow boxes indicate gene-wise resampling (genes or gene trees) and pink boxes indicate site-wise resampling. WebOct 1, 2002 · The maximum parsimony analysis used 2,000 pseudoreplicates, whereas 100 pseudoreplicates were used within the maximum likelihood analysis. Results $({\rm g}1 = -0.75)$ ... Values above nodes indicate percentage of 100 bootstrap pseudoreplicates in which the node was recovered. Nodes recovered by less than 50% …

Gene-wise resampling outperforms site-wise resampling in …

WebMar 12, 2013 · For bootstrap analyses, the number of search replicates per bootstrap pseudoreplicate was 15, in these and all phylogenetic analyses presented herein, unless … WebNumbers above the nodes indicate the percentages of 1,000 nonparametric bootstrap pseudoreplicates (>70) and below the nodes the percentages of 1,000 Bayesian posterior probabilities (>70). dicc boulder

Assessing statistical reliability of phylogenetic trees via a speedy ...

WebAug 29, 2007 · The WAG model was also tested and gave the same topologies. To estimate the robustness of the phylogenetic inference, we used the bootstrap method with 100 pseudoreplicates in all analyses. Bayesian analysis using the WAG+G+F model (4 gamma categories) was preformed with the parallel version of MrBayes 3.1.2 . The inference, … WebFeb 1, 2024 · There was much more gene-tree topological conflict in sets of site-wise-resampling bootstrap pseudoreplicates than there was among the optimal gene trees for all three studies (Table 1). This conflict ranged from an average of 0.6 (of 13) to 4.7 (of 43) additional contradicting clades per gene tree for gene trees that were already highly ... WebMar 2, 2015 · Because bootstrap sets a border-color for input elements. The red border you're expecting is probably just your browsers internal stylesheet, and although … dic builders risk